MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2744382128412476
cnr4.249097022468517
efc0.5769430596574843
fber103.49820709228516
fwhmavg3.9402666666666666
fwhmx3.85478
fwhmy4.16507
fwhmz3.80095
icvscsf0.18013416727881393
icvsgm0.47862106364419454
icvswm0.3412447690769915
inumed1.0190260410308838
inurange0.3248100519180297
qi12.3005875371914625e-06
qi20.0008305832613933354
rpvecsf28.557513509557324
rpvegm12.465289191516005
rpvewm19.7732098982099
sizex180
sizey256
sizez256
snrcsf2.6346909628402315
snrgm11.114828715722062
snrtotal9.726833093753498
snrwm15.430979602698201
snrdcsf14.760354032509815
snrdgm29.56759040110977
snrdtotal30.475387447013542
snrdwm47.09821790742103
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk6.801189929460385
summarybgmad13.910087585449219
summarybgmean51.481727600097656
summarybgmedian49.16500473022461
summarybgn2823326.0
summarybgp0530.13501214981079
summarybgp9580.13584518432617
summarybgstdv16.844526290893555
summarycsfk-0.022492181421026824
summarycsfmad140.02713012695312
summarycsfmean316.6553649902344
summarycsfmedian313.3970642089844
summarycsfn9554.0
summarycsfp05146.3317497253418
summarycsfp95505.18218078613285
summarycsfstdv118.9439926147461
summarygmk0.17292810543497517
summarygmmad55.321044921875
summarygmmean628.1415405273438
summarygmmedian627.78955078125
summarygmn45211.0
summarygmp05535.27294921875
summarygmp95720.74072265625
summarygmstdv56.481536865234375
summarywmk0.9940297443332899
summarywmmad46.829383850097656
summarywmmean984.9253540039062
summarywmmedian1000.0060424804688
summarywmn177472.0
summarywmp05845.199575805664
summarywmp951064.3525695800781
summarywmstdv64.8049087524414
tpmoverlapcsf0.21179421246051788
tpmoverlapgm0.5350035429000854
tpmoverlapwm0.5386399030685425
wm2max0.583977432716266

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5suma1b95341a236862e137dbffaca1f8163
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.