MRIQC: individual T1w report

Summary

Subject ID: 043_ExercisePre.
Date and time: 2018-05-06, 21:32.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2744382128412476
cnr			4.249097022468517
efc			0.5769430596574843
fber			103.49820709228516
fwhm	avg		3.9402666666666666
fwhm	x		3.85478
fwhm	y		4.16507
fwhm	z		3.80095
icvs	csf		0.18013416727881393
icvs	gm		0.47862106364419454
icvs	wm		0.3412447690769915
inu	med		1.0190260410308838
inu	range		0.3248100519180297
qi	1		2.3005875371914625e-06
qi	2		0.0008305832613933354
rpve	csf		28.557513509557324
rpve	gm		12.465289191516005
rpve	wm		19.7732098982099
size	x		180
size	y		256
size	z		256
snr	csf		2.6346909628402315
snr	gm		11.114828715722062
snr	total		9.726833093753498
snr	wm		15.430979602698201
snrd	csf		14.760354032509815
snrd	gm		29.56759040110977
snrd	total		30.475387447013542
snrd	wm		47.09821790742103
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	6.801189929460385
summary	bg	mad	13.910087585449219
summary	bg	mean	51.481727600097656
summary	bg	median	49.16500473022461
summary	bg	n	2823326.0
summary	bg	p05	30.13501214981079
summary	bg	p95	80.13584518432617
summary	bg	stdv	16.844526290893555
summary	csf	k	-0.022492181421026824
summary	csf	mad	140.02713012695312
summary	csf	mean	316.6553649902344
summary	csf	median	313.3970642089844
summary	csf	n	9554.0
summary	csf	p05	146.3317497253418
summary	csf	p95	505.18218078613285
summary	csf	stdv	118.9439926147461
summary	gm	k	0.17292810543497517
summary	gm	mad	55.321044921875
summary	gm	mean	628.1415405273438
summary	gm	median	627.78955078125
summary	gm	n	45211.0
summary	gm	p05	535.27294921875
summary	gm	p95	720.74072265625
summary	gm	stdv	56.481536865234375
summary	wm	k	0.9940297443332899
summary	wm	mad	46.829383850097656
summary	wm	mean	984.9253540039062
summary	wm	median	1000.0060424804688
summary	wm	n	177472.0
summary	wm	p05	845.199575805664
summary	wm	p95	1064.3525695800781
summary	wm	stdv	64.8049087524414
tpm	overlap	csf	0.21179421246051788
tpm	overlap	gm	0.5350035429000854
tpm	overlap	wm	0.5386399030685425
wm2max			0.583977432716266

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	a1b95341a236862e137dbffaca1f8163
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.